STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_4862Beta-carotene 15,15'-monooxygenase; PFAM: Carotenoid oxygenase; KEGG: sen:SACE_0013 lignostilbene-alpha/beta- dioxygenase. (470 aa)    
Predicted Functional Partners:
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sgr:SGR_5967 putative argininosuccinate lyase.
 
      0.875
Caci_6365
PFAM: Carotenoid oxygenase; KEGG: nar:Saro_3580 carotenoid oxygenase.
  
     0.715
Caci_4863
PFAM: transcriptional regulator PadR family protein; KEGG: kra:Krad_1942 PadR-like family transcriptional regulator.
       0.563
Caci_6575
KEGG: sma:SAV_1400 hypothetical protein.
    
 0.506
egtD
Methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
      
 0.487
Caci_7769
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sgr:SGR_1172 putative lyase; Belongs to the HpcH/HpaI aldolase family.
      
 0.480
purD
KEGG: sma:SAV_4149 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.
   
  
 0.467
Caci_7599
PFAM: protein of unknown function DUF58; KEGG: sma:SAV_5057 hypothetical protein.
      
 0.461
Caci_2674
Phospholipase D; KEGG: fal:FRAAL1744 hypothetical protein; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase.
     
 0.441
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 
  0.407
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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