STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_6906PFAM: glycoside hydrolase family 16; Carbohydrate binding family 6; KEGG: sgr:SGR_6942 putative large multi-functional protein. (628 aa)    
Predicted Functional Partners:
Caci_4113
PFAM: coagulation factor 5/8 type domain protein; Ricin B lectin; glycoside hydrolase family 16; Ig family protein; SMART: Ricin B lectin; Dystroglycan-type cadherin domain protein; coagulation factor 5/8 type domain protein; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein.
  
     0.527
Caci_7244
PFAM: Ricin B lectin; glycoside hydrolase family 16; SMART: Ricin B lectin; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein.
  
     0.464
Caci_5221
PFAM: glycoside hydrolase family 3 domain protein; Ig domain protein group 2 domain protein; KEGG: ote:Oter_3219 beta-glucosidase.
 
  
 0.410
Caci_6649
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 16; KEGG: ace:Acel_0129 carbohydrate-binding family 6 protein.
  
     0.409
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.