STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7353PFAM: globin; KEGG: ace:Acel_1609 globin. (129 aa)    
Predicted Functional Partners:
Caci_0578
PFAM: globin; KEGG: mgi:Mflv_3264 globin.
      
 0.711
Caci_2085
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: sco:SCO7304 putative FAD-binding dehydrogenase.
      0.685
Caci_7354
KEGG: fre:Franean1_0708 hypothetical protein.
       0.628
Caci_7335
PFAM: DSBA oxidoreductase; KEGG: kra:Krad_3524 hypothetical protein.
 
  
 0.591
Caci_7352
KEGG: cms:CMS_2170 putative integral membrane protein.
       0.561
Caci_7351
PFAM: OsmC family protein; KEGG: nca:Noca_1377 OsmC family protein.
       0.522
Caci_8079
TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: sma:SAV_4801 cytochrome c assembly protein.
 
     0.464
Caci_8080
PFAM: ResB family protein; KEGG: sgr:SGR_4198 putative cytochrome c biogenesis membrane protein.
  
     0.461
Caci_1893
PFAM: DSBA oxidoreductase; KEGG: sma:SAV_6393 protein dithiol-disulfide isomerase.
 
  
 0.441
Caci_1667
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: sma:SAV_6047 cytochrome c oxidase subunit II.
  
     0.438
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.