STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_7928KEGG: sco:SCO5203 hypothetical protein. (182 aa)    
Predicted Functional Partners:
Caci_1674
Response regulator receiver protein; KEGG: nca:Noca_3132 hypothetical protein.
  
     0.705
Caci_7927
PFAM: protein of unknown function UPF0182; KEGG: sma:SAV_3055 integral membrane protein.
       0.579
Caci_7617
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein; KEGG: sgr:SGR_4495 hypothetical protein.
  
     0.568
Caci_8445
PFAM: methyltransferase small; KEGG: sgr:SGR_3303 putative methyltransferase; Belongs to the methyltransferase superfamily.
  
     0.485
rbpA-3
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.454
Caci_7685
NADH-quinone oxidoreductase, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
  
     0.415
Caci_0580
KEGG: sen:SACE_6654 hypothetical protein.
  
     0.414
Caci_7807
PFAM: UvrD/REP helicase; KEGG: sgr:SGR_2341 putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.404
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.