STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_1440PFAM: protein of unknown function DUF107; KEGG: dau:Daud_0619 hypothetical protein. (474 aa)    
Predicted Functional Partners:
Sthe_1856
PFAM: band 7 protein; SMART: band 7 protein; KEGG: hau:Haur_1478 band 7 protein.
 
  
 0.866
Sthe_1439
PFAM: protein of unknown function DUF114; KEGG: ttj:TTHA1475 hypothetical protein.
  
  
 0.600
Sthe_1441
PFAM: protein of unknown function DUF520; KEGG: cya:CYA_0935 nucleotide-binding protein; Belongs to the UPF0234 family.
       0.580
Sthe_2356
KEGG: sus:Acid_4572 hypothetical protein.
  
  
 0.528
Sthe_2357
PFAM: band 7 protein; SMART: band 7 protein; KEGG: aba:Acid345_1402 flotillin.
   
    0.446
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.