STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_2617PFAM: Amidohydrolase 3; KEGG: sme:SMa0101 amidohydrolase (570 aa)    
Predicted Functional Partners:
Sthe_2618
PFAM: amidinotransferase; KEGG: vei:Veis_3194 amidinotransferase
 
     0.687
Sthe_2615
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpr:GBP346_A2127 ABC transporter, membrane spanning protein
       0.680
Sthe_2616
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tmz:Tmz1t_0427 binding-protein-dependent transport systems inner membrane component
       0.679
Sthe_2614
PFAM: extracellular solute-binding protein family 1; KEGG: bph:Bphy_7064 extracellular solute-binding protein
       0.477
Sthe_2619
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system
       0.438
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus DSM20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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