STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_0709KEGG: ecm:EcSMS35_3511 hypothetical protein. (463 aa)    
Predicted Functional Partners:
Kfla_0708
PFAM: zinc finger SWIM domain protein; KEGG: pna:Pnap_3737 zinc finger SWIM domain- containing protein.
     0.995
Kfla_0711
KEGG: mch:Mchl_1790 hypothetical protein.
 
     0.959
Kfla_0712
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: pna:Pnap_3742 VWA containing CoxE family protein.
 
    0.959
Kfla_3807
Hypothetical protein.
    
 0.959
Kfla_0710
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; KEGG: dac:Daci_4846 ATPase.
 
     0.953
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.820
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.808
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
 
 0.780
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.774
Kfla_0713
PFAM: GCN5-related N-acetyltransferase; KEGG: sbm:Shew185_2662 GCN5-related N- acetyltransferase.
       0.768
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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