STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_2816PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_2959 putative long-chain-fatty-acid-- CoA ligase. (596 aa)    
Predicted Functional Partners:
Kfla_6379
PFAM: AMP-dependent synthetase and ligase; KEGG: mca:MCA1569 long-chain fatty-acid-CoA ligase, putative.
 
 
0.926
Kfla_2400
PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase.
  
  
 
0.916
Kfla_1265
PFAM: lipase class 2; Protein of unknown function DUF676 hydrolase domain protein; PGAP1 family protein; KEGG: pca:Pcar_0622 hypothetical protein.
     
 0.822
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.667
Kfla_6335
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; Acyl transferase; Luciferase-like monooxygenase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
  
 
0.638
Kfla_0111
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_C0513 putative acyl-CoA dehydrogenase.
  
 0.609
Kfla_0115
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: dol:Dole_0626 acyl-CoA dehydrogenase domain- containing protein.
  
 0.609
Kfla_0401
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: vei:Veis_2517 acyl-CoA dehydrogenase domain- containing protein.
  
 0.609
Kfla_1043
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain.
  
 0.609
Kfla_1418
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: dat:HRM2_10010 Acd3.
  
 0.609
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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