STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Elen_2005PFAM: Chloride channel core; KEGG: bcb:BCB4264_A5531 voltage-gated chloride channel family protein. (417 aa)    
Predicted Functional Partners:
Elen_2004
PFAM: peptidase S58 DmpA; KEGG: dal:Dalk_5277 peptidase S58 DmpA.
       0.746
Elen_0119
TIGRFAM: M6 family metalloprotease domain protein; KEGG: gsu:GSU3016 hypothetical protein.
  
     0.658
Elen_0904
KEGG: cco:CCC13826_0614 hypothetical protein.
  
     0.515
Elen_2003
PFAM: transcriptional activator domain; KEGG: afw:Anae109_1735 SARP family transcriptional regulator.
       0.504
Elen_2363
Hypothetical protein.
 
     0.495
Elen_2001
KEGG: neu:NE2103 CopG family protein.
 
     0.492
Elen_1900
PFAM: sodium/hydrogen exchanger; KEGG: bcb:BCB4264_A0733 sodium/hydrogen exchanger family protein/TrkA domain protein.
 
   
 0.451
Elen_0104
TIGRFAM: cell wall/surface repeat protein; KEGG: mmw:Mmwyl1_0481 filamentous haemagglutinin outer membrane protein.
  
     0.440
Elen_2002
PFAM: protein of unknown function DUF497; KEGG: amc:MADE_00610 hypothetical protein.
       0.418
Elen_0127
TIGRFAM: DNA binding domain protein, excisionase family; KEGG: cco:CCC13826_0614 hypothetical protein.
  
     0.416
Your Current Organism:
Eggerthella lenta
NCBI taxonomy Id: 479437
Other names: E. lenta DSM 2243, Eggerthella lenta DSM 2243, Eggerthella lenta str. DSM 2243, Eggerthella lenta strain DSM 2243
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.