STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ02295.1Peptidase C14 caspase catalytic subunit p20. (542 aa)    
Predicted Functional Partners:
AKJ02297.1
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.784
AKJ02294.1
Putative lipoprotein.
       0.782
AKJ02296.1
Hypothetical protein.
       0.732
AKI99203.1
Putative asmA protein precursor.
  
     0.720
AKI99964.1
HEAT repeat protein.
  
     0.712
AKJ05841.1
Hypothetical protein.
 
     0.693
AKJ06524.1
TPR domain protein.
  
     0.675
AKJ02404.1
TPR domain protein, putative component of TonB system.
  
     0.667
AKJ02410.1
TPR domain protein, putative component of TonB system.
 
     0.662
AKJ00731.1
FrgA.
  
     0.638
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.