STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03291.1OmpA domain protein. (275 aa)    
Predicted Functional Partners:
AKJ03292.1
Hypothetical protein.
   
   0.695
AKI99024.1
Universal stress protein.
   
  
 0.460
AKJ04162.1
Universal stress protein.
   
  
 0.460
AKJ06518.1
Universal stress protein.
   
  
 0.460
AKJ08330.1
Universal stress protein.
   
  
 0.460
AKJ03293.1
Outer membrane protein.
       0.430
AKJ03290.1
Hypothetical protein.
       0.425
AKJ05847.1
tolB protein precursor protein.
  
 
 0.415
AKJ02583.1
Outer membrane protein H precursor.
  
 
 0.414
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
Server load: low (6%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.