STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03293.1Outer membrane protein. (600 aa)    
Predicted Functional Partners:
AKJ08187.1
Flagellar motor rotation protein MotB.
  
 
 0.751
AKJ04614.1
Outer membrane protein A precursor.
  
     0.684
AKJ03294.1
Hypothetical protein.
       0.548
AKJ03292.1
Hypothetical protein.
   
   0.501
rpsF
SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.
 
   0.470
AKJ06767.1
Flagellar motor rotation protein MotB.
  
 
0.441
AKI99820.1
Flagellar motor rotation protein MotB.
  
 
0.434
AKJ00475.1
Flagellar motor rotation protein MotB.
  
 
0.431
AKJ03291.1
OmpA domain protein.
       0.430
AKJ01102.1
Putative lipoprotein.
 
 
 0.429
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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