STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03336.1Alginate lyase precursor. (477 aa)    
Predicted Functional Partners:
AKJ04963.1
Extracellular alginate lyase.
   
 0.824
AKI99865.1
F5/8 type C domain protein.
 
     0.648
AKJ03586.1
Putative secreted protein.
  
     0.575
AKJ05929.1
F5/8 type C domain protein.
   
 0.535
AKJ00550.1
Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family.
  
     0.529
AKJ05749.1
F5/8 type C domain protein.
 
   
 0.527
AKJ04472.1
Putative secreted protein.
  
     0.515
AKJ06226.1
Endo-1,4-beta-xylanase A precursor.
 
   
 0.490
AKJ02104.1
Hypothetical protein.
  
     0.480
AKJ02804.1
Rhs-family protein.
 
     0.478
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.