STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03555.1Outer membrane vitamin B12 receptor BtuB. (895 aa)    
Predicted Functional Partners:
AKJ02759.1
TonB-dependent hemin, ferrichrome receptor.
 
   
 0.616
AKJ06130.1
TonB-dependent receptor.
 
   
 0.572
AKI99411.1
Oar protein.
 
   
 0.566
AKJ07519.1
Ferric siderophore transport system, periplasmic binding protein TonB.
 
 
 
 0.536
AKJ06010.1
Nicel/Cobalt-specific TonB-dependent outer membrane receptor.
 
 
 
 0.524
AKJ07628.1
Outer membrane vitamin B12 receptor BtuB.
  
     0.519
AKJ03212.1
TonB family protein.
   
 
 0.462
AKJ06332.1
TonB family protein.
   
 
 0.462
AKJ08151.1
TonB family protein.
   
 
 0.462
AKJ01574.1
Putative abductin-like protein.
 
 
 
 0.455
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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