STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03562.1Twitching motility protein PilT. (575 aa)    
Predicted Functional Partners:
AKJ06663.1
Type IV fimbrial assembly protein PilC.
  
 0.814
AKJ06656.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.802
AKJ00954.1
General secretion pathway protein F.
 
  
 0.794
AKJ05719.1
General secretion pathway protein F.
 
  
 0.794
AKJ03563.1
Hypothetical protein.
       0.773
AKJ06653.1
Type IV pilus biogenesis protein PilM.
 
   
 0.757
AKJ03560.1
Hypothetical protein.
       0.741
AKJ06019.1
Type IV pilin PilA.
 
   
 0.725
AKJ06657.1
Type IV pilin PilA.
 
   
 0.711
AKJ07965.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.705
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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