STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03603.1Transcriptional regulator, AraC family protein. (326 aa)    
Predicted Functional Partners:
AKJ03604.1
Hypothetical protein.
 
     0.624
AKJ05015.1
Transcriptional regulator, AraC family.
  
     0.603
AKJ03605.1
Oxidoreductase.
 
     0.602
AKI99312.1
Transcriptional regulator, AraC family.
  
     0.560
AKJ00607.1
Transcriptional regulator, AraC family.
  
     0.542
AKJ06521.1
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.542
AKJ02927.1
Transcriptional regulator, TetR family.
  
     0.491
AKJ01848.1
ADA regulatory protein.
 
   
 0.462
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.