STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03673.1Soluble lytic murein transglycosylase. (537 aa)    
Predicted Functional Partners:
AKJ03674.1
Transcriptional regulator, MecI family.
 
  
 0.884
AKJ06569.1
Hypothetical protein.
  
     0.598
AKI99309.1
VpsC protein.
  
     0.530
AKJ03675.1
Hypothetical protein.
       0.505
AKI99212.1
Transcriptional repressor, BlaI/MecI family.
 
  
 0.494
AKJ03672.1
Sensory box histidine kinase/response regulator.
       0.483
AKJ02583.1
Outer membrane protein H precursor.
  
     0.481
AKJ02580.1
Lipoprotein releasing system transmembrane protein LolC.
  
     0.468
AKJ02135.1
Hypothetical protein.
  
     0.441
AKI98563.1
Universal stress protein.
  
     0.426
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.