STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03743.1LysM domain protein. (425 aa)    
Predicted Functional Partners:
AKJ07109.1
Hypothetical protein.
  
     0.746
AKJ02201.1
Hypothetical protein.
  
     0.739
AKI99735.1
Inner spore coat protein H.
  
   
 0.731
AKI99115.1
Hypothetical protein.
  
     0.721
AKJ02042.1
RTX toxin.
 
     0.709
AKJ06403.1
Membrane protein.
  
     0.696
AKJ01018.1
Peptidase, M19 family.
  
     0.687
AKJ00837.1
Peptidase, M19 family.
  
     0.685
AKJ00234.1
Metal dependent amidohydrolase.
 
     0.668
AKI99350.1
Phosphoesterase protein.
  
     0.665
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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