AKJ03945.1 protein (Archangium gephyra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKJ03945.1

Sensory box histidine kinase. (499 aa)

Predicted Functional Partners:

AKJ03946.1

0.955

AKI99081.1

0.801

AKJ00612.1

0.801

AKJ07309.1

0.798

AKJ01938.1

0.786

AKJ02562.1

0.784

AKJ06433.1

0.784

AKI99082.1

0.782

AKJ03460.1

0.777

AKJ00885.1

0.775

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKI99081.1	AKI99082.1	AA314_00708	AA314_00709	Chemotaxis protein methyltransferase CheR.	Chemotaxis protein methyltransferase CheR.	0.944
AKI99081.1	AKJ00612.1	AA314_00708	AA314_02238	Chemotaxis protein methyltransferase CheR.	Diguanylate cyclase/phosphodiesterase.	0.961
AKI99081.1	AKJ00885.1	AA314_00708	AA314_02511	Chemotaxis protein methyltransferase CheR.	Diguanylate cyclase/phosphodiesterase.	0.925
AKI99081.1	AKJ01938.1	AA314_00708	AA314_03564	Chemotaxis protein methyltransferase CheR.	Phosphate regulon transcriptional regulatory protein PhoB.	0.487
AKI99081.1	AKJ02562.1	AA314_00708	AA314_04188	Chemotaxis protein methyltransferase CheR.	Chemotaxis regulator.	0.800
AKI99081.1	AKJ03460.1	AA314_00708	AA314_05086	Chemotaxis protein methyltransferase CheR.	Histidine protein kinase AsgD.	0.590
AKI99081.1	AKJ03945.1	AA314_00708	AA314_05571	Chemotaxis protein methyltransferase CheR.	Sensory box histidine kinase.	0.801
AKI99081.1	AKJ03946.1	AA314_00708	AA314_05572	Chemotaxis protein methyltransferase CheR.	DNA-binding response regulator.	0.452
AKI99081.1	AKJ06433.1	AA314_00708	AA314_08059	Chemotaxis protein methyltransferase CheR.	DNA-binding response regulator.	0.447
AKI99081.1	AKJ07309.1	AA314_00708	AA314_08935	Chemotaxis protein methyltransferase CheR.	Phosphate regulon transcriptional regulatory protein PhoB.	0.489
AKI99082.1	AKI99081.1	AA314_00709	AA314_00708	Chemotaxis protein methyltransferase CheR.	Chemotaxis protein methyltransferase CheR.	0.944
AKI99082.1	AKJ00612.1	AA314_00709	AA314_02238	Chemotaxis protein methyltransferase CheR.	Diguanylate cyclase/phosphodiesterase.	0.962
AKI99082.1	AKJ00885.1	AA314_00709	AA314_02511	Chemotaxis protein methyltransferase CheR.	Diguanylate cyclase/phosphodiesterase.	0.925
AKI99082.1	AKJ01938.1	AA314_00709	AA314_03564	Chemotaxis protein methyltransferase CheR.	Phosphate regulon transcriptional regulatory protein PhoB.	0.487
AKI99082.1	AKJ02562.1	AA314_00709	AA314_04188	Chemotaxis protein methyltransferase CheR.	Chemotaxis regulator.	0.786
AKI99082.1	AKJ03460.1	AA314_00709	AA314_05086	Chemotaxis protein methyltransferase CheR.	Histidine protein kinase AsgD.	0.592
AKI99082.1	AKJ03945.1	AA314_00709	AA314_05571	Chemotaxis protein methyltransferase CheR.	Sensory box histidine kinase.	0.782
AKI99082.1	AKJ03946.1	AA314_00709	AA314_05572	Chemotaxis protein methyltransferase CheR.	DNA-binding response regulator.	0.655
AKI99082.1	AKJ06433.1	AA314_00709	AA314_08059	Chemotaxis protein methyltransferase CheR.	DNA-binding response regulator.	0.457
AKI99082.1	AKJ07309.1	AA314_00709	AA314_08935	Chemotaxis protein methyltransferase CheR.	Phosphate regulon transcriptional regulatory protein PhoB.	0.498