STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ03998.1DnaJ domain protein. (377 aa)    
Predicted Functional Partners:
secY
Preprotein translocase secY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
   
 
 0.811
AKJ03999.1
ATP-dependent Clp protease ATP-binding subunit ClpA.
       0.732
AKJ04000.1
ATP-dependent Clp protease ATP-binding subunit ClpA.
       0.732
AKJ04001.1
ClpB protein.
       0.732
AKI99960.1
Putative fatty acid desaturase.
  
     0.688
AKI99912.1
Myosin heavy chain.
  
     0.677
AKJ07698.1
Hypothetical protein.
  
     0.671
AKJ01715.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.665
AKJ04002.1
Hypothetical protein.
       0.661
AKJ03917.1
Hypothetical protein.
  
     0.656
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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