STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04189.1Putative ATPase. (610 aa)    
Predicted Functional Partners:
AKJ02685.1
Flp pilus assembly protein TadB.
 
    0.796
AKJ02686.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
 
    0.795
AKJ04906.1
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
 
     0.732
AKJ00065.1
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
 
     0.723
AKJ04188.1
Hypothetical protein.
       0.572
AKJ04190.1
Acyl-CoA dehydrogenase.
       0.572
AKJ04907.1
Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly; Belongs to the bacterial secretin family.
 
     0.566
AKJ02684.1
Flp pilus assembly protein RcpC/CpaB.
 
    0.555
AKJ04908.1
Type IV prepilin peptidase TadV/CpaA.
 
   
 0.555
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.526
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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