STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04258.1D-alanyl-D-alanine carboxypeptidase. (501 aa)    
Predicted Functional Partners:
AKJ00629.1
D-alanyl-D-alanine carboxypeptidase.
  
  
 
0.929
AKJ01566.1
Beta-lactamase class C and other penicillin binding protein.
  
  
 0.917
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
       0.651
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
  
  
 0.611
AKJ01565.1
Muramoyltetrapeptide carboxypeptidase.
 
   
 0.510
AKJ06124.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.480
AKJ07376.1
Aldose 1-epimerase family protein.
  
    0.480
AKJ04260.1
Hypothetical protein.
       0.446
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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