STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04331.1Flagellar synthesis regulator FleN. (341 aa)    
Predicted Functional Partners:
AKJ05823.1
Flagellar motor switch protein FliM.
 
  
 0.903
AKJ04330.1
Hypothetical protein.
 
   
 0.837
AKJ05831.1
RNA polymerase sigma factor for flagellar operon; Belongs to the sigma-70 factor family.
 
  
 0.730
AKJ05818.1
Flagellar biosynthesis protein FlhB.
 
 
 0.660
AKJ06422.1
Flagellar biosynthesis protein FlhB.
 
 
 0.624
AKJ04332.1
Hypothetical protein.
       0.615
AKJ05817.1
Flagellar biosynthesis protein FlhB.
 
 
 0.614
AKJ05716.1
General secretion pathway protein C.
  
     0.574
AKJ06427.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
  
 0.565
AKJ04328.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.558
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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