STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
selAL-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (465 aa)    
Predicted Functional Partners:
selD
Selenide,water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
  
 0.984
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
     
 0.922
AKJ00634.1
Selenocysteine-specific translation elongation factor.
  
 0.900
AKI98616.1
Formate dehydrogenase O alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.792
AKI98617.1
Formate dehydrogenase O beta subunit.
 
   
 0.792
AKJ04333.1
HNH endonuclease family protein.
       0.773
AKI98618.1
Formate dehydrogenase O putative subunit.
 
   
 0.702
AKJ05599.1
Molybdenum cofactor biosynthesis protein MoaD.
  
   0.638
AKJ04335.1
Soluble lytic murein transglycosylase precursor.
       0.576
AKJ05255.1
Hypothetical protein.
  
    0.550
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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