STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04368.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
AKJ04367.1
Hypothetical protein.
       0.627
truA-2
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.509
AKI99361.1
MotA/TolQ/ExbB proton channel family protein.
  
 
 0.438
AKJ01277.1
MotA/TolQ/ExbB proton channel family protein.
  
 
 0.438
AKJ02666.1
MotA/TolQ/ExbB proton channel family protein.
  
 
 0.438
AKJ05038.1
Ferric siderophore transport system, biopolymer transport protein ExbB.
  
 
 0.438
AKJ06617.1
MotA/TolQ/ExbB proton channel family protein.
  
 
 0.438
AKJ07517.1
MotA/TolQ/ExbB proton channel family protein.
  
 
 0.438
AKJ07964.1
Ferric siderophore transport system, biopolymer transport protein ExbB.
  
 
 0.438
AKI99359.1
Biopolymer transport protein ExbD/TolR.
  
 
 0.430
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.