STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ04431.1Hypothetical protein. (414 aa)    
Predicted Functional Partners:
AKJ04430.1
Hypothetical protein.
     
 0.810
AKJ00989.1
Transcriptional regulator, AraC family.
  
     0.668
AKJ03802.1
Hypothetical protein.
  
     0.664
AKJ06169.1
Hypothetical protein.
  
     0.608
AKJ01018.1
Peptidase, M19 family.
  
     0.580
AKJ03664.1
Putative ATP binding protein SugR.
  
     0.579
AKJ01518.1
Phage lysin, 1,4-beta-N-acetylmuramidase.
  
     0.560
AKJ00837.1
Peptidase, M19 family.
  
     0.557
AKI99751.1
1,4-dihydroxy-2-naphthoate polyprenyltransferase.
  
     0.548
AKJ05464.1
PTS system, fructose-specific IIA component.
  
     0.533
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.