STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSCysteine desulfurase. (403 aa)    
Predicted Functional Partners:
thiF
Bifunctional enzyme, contains ThiF/HesB family NAD/FAD binding and Rhodanese similarity domains.
   
 0.985
Minf_0460
NifQ family protein.
  
 0.977
sirA
Predicted redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.
   
 0.974
sseA
Rhodanese-related sulfurtransferase.
  
 0.954
sseA-3
Rhodanese-related sulfurtransferase.
   
 0.910
iscU
NifU-like protein involved in Fe-S cluster formation.
  
 0.903
sufA-2
Fe-S cluster assembly scaffold protein SufA; Belongs to the HesB/IscA family.
  
  
 0.836
Minf_0456
Conserved hypothetical protein.
  
    0.787
Minf_0458
NifZ domain.
  
    0.787
Minf_0457
FeS4 cluster protein and leucine rich repeats.
       0.785
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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