STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Minf_1012Conserved hypothetical protein. (305 aa)    
Predicted Functional Partners:
Minf_1013
Hypothetical protein.
       0.757
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.671
rpsR
Ribosomal protein S18; Belongs to the bacterial ribosomal protein bS18 family.
       0.666
dksA
DnaK suppressor protein.
       0.610
dedA
Uncharacterized membrane-associated protein, DedA family.
      
 0.586
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.539
Minf_1380
Conserved hypothetical protein.
  
     0.462
tolC-10
Outer membrane protein.
  
     0.440
elaB
Uncharacterized conserved protein.
  
     0.434
plcC-2
Phospholipase C.
  
     0.422
Your Current Organism:
Methylacidiphilum infernorum
NCBI taxonomy Id: 481448
Other names: M. infernorum V4, Methylacidiphilum infernorum V4, Methylacidiphilum infernorum str. V4, Methylacidiphilum infernorum strain V4, Verrucomicrobia bacterium V4, Verrucomicrobiae bacterium V4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.