node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACX62312.1 | ACX62971.1 | GYMC10_0002 | GYMC10_0669 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | 0.927 |
ACX62312.1 | ACX67221.1 | GYMC10_0002 | GYMC10_5008 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Exodeoxyribonuclease III Xth; KEGG: bbe:BBR47_03090 exodeoxyribonuclease; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.901 |
ACX62312.1 | ACX67322.1 | GYMC10_0002 | GYMC10_5111 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: pjd:Pjdr2_1409 5'-3' exonuclease. | 0.946 |
ACX62312.1 | polA | GYMC10_0002 | GYMC10_4912 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.981 |
ACX62971.1 | ACX62312.1 | GYMC10_0669 | GYMC10_0002 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.927 |
ACX62971.1 | ACX64036.1 | GYMC10_0669 | GYMC10_1753 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | PFAM: SMC domain protein; KEGG: gtn:GTNG_0591 YirY. | 0.542 |
ACX62971.1 | ACX65435.1 | GYMC10_0669 | GYMC10_3179 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | PFAM: Protein of unknown function DUF2277; KEGG: bbe:BBR47_46870 hypothetical protein. | 0.419 |
ACX62971.1 | ACX66734.1 | GYMC10_0669 | GYMC10_4511 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | TIGRFAM: histidinol-phosphate phosphatase family protein; HAD-superfamily hydrolase, subfamily IA, variant 1; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pjd:Pjdr2_4049 histidinol-phosphate phosphatase family protein. | 0.550 |
ACX62971.1 | ACX67221.1 | GYMC10_0669 | GYMC10_5008 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | Exodeoxyribonuclease III Xth; KEGG: bbe:BBR47_03090 exodeoxyribonuclease; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.667 |
ACX62971.1 | ACX67322.1 | GYMC10_0669 | GYMC10_5111 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: pjd:Pjdr2_1409 5'-3' exonuclease. | 0.516 |
ACX62971.1 | ACX67526.1 | GYMC10_0669 | GYMC10_5317 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | TIGRFAM: DNA polymerase LigD, polymerase domain protein; PFAM: DNA primase small subunit; KEGG: pjd:Pjdr2_4985 DNA polymerase LigD, polymerase domain protein. | 0.981 |
ACX62971.1 | ku | GYMC10_0669 | GYMC10_5315 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.846 |
ACX62971.1 | ligA | GYMC10_0669 | GYMC10_5798 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.921 |
ACX62971.1 | polA | GYMC10_0669 | GYMC10_4912 | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.774 |
ACX64036.1 | ACX62971.1 | GYMC10_1753 | GYMC10_0669 | PFAM: SMC domain protein; KEGG: gtn:GTNG_0591 YirY. | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | 0.542 |
ACX64036.1 | ACX67322.1 | GYMC10_1753 | GYMC10_5111 | PFAM: SMC domain protein; KEGG: gtn:GTNG_0591 YirY. | PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; KEGG: pjd:Pjdr2_1409 5'-3' exonuclease. | 0.664 |
ACX64036.1 | polA | GYMC10_1753 | GYMC10_4912 | PFAM: SMC domain protein; KEGG: gtn:GTNG_0591 YirY. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.953 |
ACX65435.1 | ACX62971.1 | GYMC10_3179 | GYMC10_0669 | PFAM: Protein of unknown function DUF2277; KEGG: bbe:BBR47_46870 hypothetical protein. | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | 0.419 |
ACX66734.1 | ACX62971.1 | GYMC10_4511 | GYMC10_0669 | TIGRFAM: histidinol-phosphate phosphatase family protein; HAD-superfamily hydrolase, subfamily IA, variant 1; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pjd:Pjdr2_4049 histidinol-phosphate phosphatase family protein. | PFAM: ATP dependent DNA ligase; KEGG: pjd:Pjdr2_1127 ATP dependent DNA ligase. | 0.550 |
ACX66734.1 | ACX67221.1 | GYMC10_4511 | GYMC10_5008 | TIGRFAM: histidinol-phosphate phosphatase family protein; HAD-superfamily hydrolase, subfamily IA, variant 1; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pjd:Pjdr2_4049 histidinol-phosphate phosphatase family protein. | Exodeoxyribonuclease III Xth; KEGG: bbe:BBR47_03090 exodeoxyribonuclease; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.435 |