STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPX45408.1Hypothetical protein. (307 aa)    
Predicted Functional Partners:
fcl_1
GDP-L-fucose synthase.
  
 
 0.965
hddC_1
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
  
 
 0.927
hddC_2
D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase.
  
 
 0.927
rffG
dTDP-glucose 4,6-dehydratase 2; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.864
lnpD
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
 0.841
OPX43748.1
Glycosyl transferases group 1.
  
 
 0.839
strL
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.796
gmhB
D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
  
 
 0.693
OPX42958.1
Polysaccharide biosynthesis protein.
 
  
 0.665
epsL_1
Putative sugar transferase EpsL.
  
  
 0.647
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.