STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
moaA_3Cyclic pyranopterin monophosphate synthase. (401 aa)    
Predicted Functional Partners:
moaA_2
Cyclic pyranopterin monophosphate synthase.
 
    
0.693
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.692
albA_2
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
  
     0.689
OPX45158.1
Hypothetical protein.
       0.664
OPX45159.1
Hypothetical protein.
       0.472
msbA_2
Lipid A export ATP-binding/permease protein MsbA.
       0.446
OPX45205.1
Coproporphyrinogen III oxidase.
  
    0.419
OPX45202.1
B12 binding domain protein.
  
    0.412
OPX45203.1
Biotin synthase.
  
    0.402
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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