STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedQPutative diguanylate cyclase YedQ. (398 aa)    
Predicted Functional Partners:
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.943
gmr
Cyclic di-GMP phosphodiesterase Gmr.
 0.942
barA
Signal transduction histidine-protein kinase BarA.
 
 0.923
rpfG_10
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.919
rpfG_5
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.903
cph1_3
Phytochrome-like protein cph1.
   
 0.859
arcB
Aerobic respiration control sensor protein ArcB.
  
 0.849
cph2_1
Phytochrome-like protein cph2.
0.827
rpfG_4
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
  0.793
rpfG_9
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
  0.782
Your Current Organism:
Ruminiclostridium hungatei
NCBI taxonomy Id: 48256
Other names: ATCC 700212, Clostridium hungatei, Clostridium hungatei Monserrate et al. 2001, DSM 14427, R. hungatei, strain AD
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