A0A168M7S3 protein (Absidia glauca) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A168M7S3

BPL/LPL catalytic domain-containing protein. (966 aa)

Predicted Functional Partners:

A0A163JH50

0.871

A0A163USB9

0.839

A0A168QRS2

0.839

A0A163JHN0

0.825

A0A168MKF9

0.825

A0A163M337

0.772

A0A163MG59

0.772

A0A168M4G6

0.772

A0A168P8E6

0.772

A0A163IY00

0.771

Your Current Organism:

Absidia glauca

NCBI taxonomy Id: 4829
Other names: A. glauca, CBS 101.08, MUCL 10044

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A163IY00	A0A163JH50	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A163IY00	A0A168M7S3	Uncharacterized protein.	BPL/LPL catalytic domain-containing protein.	0.771
A0A163JH50	A0A163IY00	Uncharacterized protein.	Uncharacterized protein.	0.854
A0A163JH50	A0A163JHN0	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A163JH50	A0A168M7S3	Uncharacterized protein.	BPL/LPL catalytic domain-containing protein.	0.871
A0A163JH50	A0A168MKF9	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A163JHN0	A0A163JH50	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A163JHN0	A0A168M7S3	Uncharacterized protein.	BPL/LPL catalytic domain-containing protein.	0.825
A0A163M337	A0A163MG59	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A163M337	A0A163USB9	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A163M337	A0A168M7S3	Uncharacterized protein.	BPL/LPL catalytic domain-containing protein.	0.772
A0A163M337	A0A168P8E6	Uncharacterized protein.	Uncharacterized protein.	0.738
A0A163M337	A0A168QRS2	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A163MG59	A0A163M337	Uncharacterized protein.	Uncharacterized protein.	0.717
A0A163MG59	A0A163USB9	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A163MG59	A0A168M4G6	Uncharacterized protein.	Uncharacterized protein.	0.740
A0A163MG59	A0A168M7S3	Uncharacterized protein.	BPL/LPL catalytic domain-containing protein.	0.772
A0A163MG59	A0A168QRS2	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A163USB9	A0A163M337	Uncharacterized protein.	Uncharacterized protein.	0.782
A0A163USB9	A0A163MG59	Uncharacterized protein.	Uncharacterized protein.	0.782