Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
THA_1766 | engB | THA_1766 | THA_1787 | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Protein containing GTP binding domain; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.805 |
THA_1766 | rplO | THA_1766 | THA_1234 | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.717 |
THA_1766 | rplQ | THA_1766 | THA_1243 | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L17. | 0.724 |
THA_1766 | trmE | THA_1766 | THA_1678 | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.785 |
THA_1784 | THA_1785 | THA_1784 | THA_1785 | Hdod domain family. | Sensor histidine kinase. | 0.826 |
THA_1784 | THA_1789 | THA_1784 | THA_1789 | Hdod domain family. | Conserved hypothetical protein. | 0.792 |
THA_1784 | argS | THA_1784 | THA_1786 | Hdod domain family. | arginyl-tRNA synthetase. | 0.785 |
THA_1784 | engB | THA_1784 | THA_1787 | Hdod domain family. | Protein containing GTP binding domain; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.796 |
THA_1784 | lon | THA_1784 | THA_1788 | Hdod domain family. | Lon ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.788 |
THA_1784 | rbfA | THA_1784 | THA_1783 | Hdod domain family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.813 |
THA_1785 | THA_1784 | THA_1785 | THA_1784 | Sensor histidine kinase. | Hdod domain family. | 0.826 |
THA_1785 | THA_1789 | THA_1785 | THA_1789 | Sensor histidine kinase. | Conserved hypothetical protein. | 0.785 |
THA_1785 | argS | THA_1785 | THA_1786 | Sensor histidine kinase. | arginyl-tRNA synthetase. | 0.786 |
THA_1785 | engB | THA_1785 | THA_1787 | Sensor histidine kinase. | Protein containing GTP binding domain; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.785 |
THA_1785 | lon | THA_1785 | THA_1788 | Sensor histidine kinase. | Lon ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.808 |
THA_1785 | rbfA | THA_1785 | THA_1783 | Sensor histidine kinase. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.807 |
THA_1789 | THA_1784 | THA_1789 | THA_1784 | Conserved hypothetical protein. | Hdod domain family. | 0.792 |
THA_1789 | THA_1785 | THA_1789 | THA_1785 | Conserved hypothetical protein. | Sensor histidine kinase. | 0.785 |
THA_1789 | argS | THA_1789 | THA_1786 | Conserved hypothetical protein. | arginyl-tRNA synthetase. | 0.807 |
THA_1789 | engB | THA_1789 | THA_1787 | Conserved hypothetical protein. | Protein containing GTP binding domain; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.825 |
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