Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
THA_1343 | hutH | THA_1343 | THA_91 | Amidohydrolase family protein. | Histidine ammonia-lyase. | 0.807 |
THA_1343 | hutU | THA_1343 | THA_189 | Amidohydrolase family protein. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.807 |
THA_184 | THA_185 | THA_184 | THA_185 | Alcohol dehydrogenase, iron-containing. | SAM-dependent methyltransferase. | 0.807 |
THA_184 | THA_186 | THA_184 | THA_186 | Alcohol dehydrogenase, iron-containing. | Hypothetical protein. | 0.805 |
THA_184 | THA_187 | THA_184 | THA_187 | Alcohol dehydrogenase, iron-containing. | Nudix-family protein; Belongs to the Nudix hydrolase family. | 0.754 |
THA_184 | THA_188 | THA_184 | THA_188 | Alcohol dehydrogenase, iron-containing. | Succinyl-diaminopimelate desuccinylase. | 0.769 |
THA_184 | gcvPA | THA_184 | THA_182 | Alcohol dehydrogenase, iron-containing. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.759 |
THA_184 | gcvPB | THA_184 | THA_183 | Alcohol dehydrogenase, iron-containing. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.817 |
THA_184 | hutU | THA_184 | THA_189 | Alcohol dehydrogenase, iron-containing. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.717 |
THA_185 | THA_184 | THA_185 | THA_184 | SAM-dependent methyltransferase. | Alcohol dehydrogenase, iron-containing. | 0.807 |
THA_185 | THA_186 | THA_185 | THA_186 | SAM-dependent methyltransferase. | Hypothetical protein. | 0.812 |
THA_185 | THA_187 | THA_185 | THA_187 | SAM-dependent methyltransferase. | Nudix-family protein; Belongs to the Nudix hydrolase family. | 0.744 |
THA_185 | THA_188 | THA_185 | THA_188 | SAM-dependent methyltransferase. | Succinyl-diaminopimelate desuccinylase. | 0.769 |
THA_185 | gcvPA | THA_185 | THA_182 | SAM-dependent methyltransferase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.756 |
THA_185 | gcvPB | THA_185 | THA_183 | SAM-dependent methyltransferase. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.807 |
THA_185 | hutU | THA_185 | THA_189 | SAM-dependent methyltransferase. | Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. | 0.718 |
THA_186 | THA_184 | THA_186 | THA_184 | Hypothetical protein. | Alcohol dehydrogenase, iron-containing. | 0.805 |
THA_186 | THA_185 | THA_186 | THA_185 | Hypothetical protein. | SAM-dependent methyltransferase. | 0.812 |
THA_186 | THA_187 | THA_186 | THA_187 | Hypothetical protein. | Nudix-family protein; Belongs to the Nudix hydrolase family. | 0.744 |
THA_186 | THA_188 | THA_186 | THA_188 | Hypothetical protein. | Succinyl-diaminopimelate desuccinylase. | 0.774 |
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