STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_005346Homeobox domain-containing protein. (259 aa)    
Predicted Functional Partners:
CU098_007391
Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.
   
 0.683
CU098_010667
Homeobox domain-containing protein.
   
 0.683
RPD3_2
Histone deacetylase.
    
 0.630
RPD3_1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.630
RPD3_4
Histone deacetylase.
    
 0.630
RPD3_3
Histone deacetylase.
    
 0.630
CU098_002354
Uncharacterized protein.
    
 0.554
CU098_005319
HECT domain-containing protein.
    
 0.554
PUB1
E3 ubiquitin-protein ligase pub1.
    
 0.554
CU098_004876
Uncharacterized protein.
    
 0.554
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.