URA7_3 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

URA7_3

CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. (563 aa)

Predicted Functional Partners:

RPL5

0.847

CU098_012235

0.846

GUA1_1

0.842

GUA1_2

0.842

DARS2_1

0.814

DARS2_2

0.814

CU098_000979

0.810

CU098_002542

0.810

RPL35

0.780

CU098_009803

0.776

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_000979	CU098_009803	A0A367IVI0	A0A367KLS8	Uncharacterized protein.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.734
CU098_000979	GUA1_1	A0A367IVI0	A0A367KM83	Uncharacterized protein.	GMP synthase (Glutamine-hydrolyzing).	0.865
CU098_000979	GUA1_2	A0A367IVI0	A0A367KMD4	Uncharacterized protein.	GMP synthase (Glutamine-hydrolyzing).	0.865
CU098_000979	URA7_3	A0A367IVI0	A0A367JAZ9	Uncharacterized protein.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.810
CU098_002542	RPL35	A0A367KN66	A0A367J929	Ribos_L4_asso_C domain-containing protein.	60S ribosomal protein L35.	0.999
CU098_002542	RPL5	A0A367KN66	A0A367K684	Ribos_L4_asso_C domain-containing protein.	60S ribosomal protein L5.	0.999
CU098_002542	URA7_3	A0A367KN66	A0A367JAZ9	Ribos_L4_asso_C domain-containing protein.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.810
CU098_009803	CU098_000979	A0A367KLS8	A0A367IVI0	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Uncharacterized protein.	0.734
CU098_009803	CU098_012235	A0A367KLS8	A0A367KS56	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Cytidylate_kin domain-containing protein.	0.405
CU098_009803	DARS2_1	A0A367KLS8	A0A367KF40	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Aspartyl-tRNA synthetase 2, mitochondrial.	0.500
CU098_009803	DARS2_2	A0A367KLS8	A0A367KUF4	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	Aspartyl-tRNA synthetase 2, mitochondrial.	0.500
CU098_009803	GUA1_1	A0A367KLS8	A0A367KM83	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	GMP synthase (Glutamine-hydrolyzing).	0.494
CU098_009803	GUA1_2	A0A367KLS8	A0A367KMD4	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	GMP synthase (Glutamine-hydrolyzing).	0.494
CU098_009803	RPL5	A0A367KLS8	A0A367K684	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	60S ribosomal protein L5.	0.492
CU098_009803	URA7_3	A0A367KLS8	A0A367JAZ9	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.776
CU098_012235	CU098_009803	A0A367KS56	A0A367KLS8	Cytidylate_kin domain-containing protein.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.405
CU098_012235	GUA1_1	A0A367KS56	A0A367KM83	Cytidylate_kin domain-containing protein.	GMP synthase (Glutamine-hydrolyzing).	0.463
CU098_012235	GUA1_2	A0A367KS56	A0A367KMD4	Cytidylate_kin domain-containing protein.	GMP synthase (Glutamine-hydrolyzing).	0.463
CU098_012235	URA7_3	A0A367KS56	A0A367JAZ9	Cytidylate_kin domain-containing protein.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.846
DARS2_1	CU098_009803	A0A367KF40	A0A367KLS8	Aspartyl-tRNA synthetase 2, mitochondrial.	Obg-like ATPase 1; Hydrolyzes ATP, and can also hydrolyze GTP with lower efficiency. Has lower affinity for GTP.	0.500