STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_007493TAF4 domain-containing protein. (675 aa)    
Predicted Functional Partners:
TAF11
Transcription initiation factor TFIID subunit 11.
    
 0.991
CU098_009794
TAFII55_N domain-containing protein.
    
 0.991
TAF10
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 0.986
TAF9
Transcription initiation factor TFIID subunit 9.
    
 0.986
TAF13
Transcription initiation factor TFIID subunit 13.
    
 0.986
CU098_000791
TAF6_C domain-containing protein.
    
 0.982
CU098_007471
TAF domain-containing protein.
    
 0.982
CU098_003147
BTB domain-containing protein.
    
 0.973
TAF5_1
Transcription initiation factor TFIID subunit 5.
   
 0.973
CU098_002086
Uncharacterized protein.
    
 0.973
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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