CU098_009662 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_009662

Usp domain-containing protein. (338 aa)

Predicted Functional Partners:

LEO1_1

0.990

LEO1_2

0.990

CU098_007377

0.849

SKI3_1

0.810

SKI3_2

0.810

CYC1_1

0.790

DDX20

0.770

HBS1L

0.754

CTR9_1

0.740

CTR9_2

0.740

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTR9_1	CU098_007377	A0A367KMJ1	A0A367ITX9	Protein required for normal CLN1 and CLN2 G1 cyclin expression.	CDC73_N domain-containing protein.	0.991
CTR9_1	CU098_009662	A0A367KMJ1	A0A367JN69	Protein required for normal CLN1 and CLN2 G1 cyclin expression.	Usp domain-containing protein.	0.740
CTR9_1	LEO1_1	A0A367KMJ1	A0A367IX09	Protein required for normal CLN1 and CLN2 G1 cyclin expression.	Paf1 complex component.	0.998
CTR9_1	LEO1_2	A0A367KMJ1	A0A367KRV9	Protein required for normal CLN1 and CLN2 G1 cyclin expression.	Paf1 complex component.	0.998
CTR9_2	CU098_007377	A0A367KWF6	A0A367ITX9	Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.	CDC73_N domain-containing protein.	0.991
CTR9_2	CU098_009662	A0A367KWF6	A0A367JN69	Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.	Usp domain-containing protein.	0.740
CTR9_2	LEO1_1	A0A367KWF6	A0A367IX09	Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.	Paf1 complex component.	0.998
CTR9_2	LEO1_2	A0A367KWF6	A0A367KRV9	Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.	Paf1 complex component.	0.998
CU098_007377	CTR9_1	A0A367ITX9	A0A367KMJ1	CDC73_N domain-containing protein.	Protein required for normal CLN1 and CLN2 G1 cyclin expression.	0.991
CU098_007377	CTR9_2	A0A367ITX9	A0A367KWF6	CDC73_N domain-containing protein.	Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.	0.991
CU098_007377	CU098_009662	A0A367ITX9	A0A367JN69	CDC73_N domain-containing protein.	Usp domain-containing protein.	0.849
CU098_007377	LEO1_1	A0A367ITX9	A0A367IX09	CDC73_N domain-containing protein.	Paf1 complex component.	0.999
CU098_007377	LEO1_2	A0A367ITX9	A0A367KRV9	CDC73_N domain-containing protein.	Paf1 complex component.	0.999
CU098_009662	CTR9_1	A0A367JN69	A0A367KMJ1	Usp domain-containing protein.	Protein required for normal CLN1 and CLN2 G1 cyclin expression.	0.740
CU098_009662	CTR9_2	A0A367JN69	A0A367KWF6	Usp domain-containing protein.	Protein required for normal CLN1 and CLN2 G1 cyclin expression; Belongs to the membrane-bound acyltransferase family.	0.740
CU098_009662	CU098_007377	A0A367JN69	A0A367ITX9	Usp domain-containing protein.	CDC73_N domain-containing protein.	0.849
CU098_009662	CYC1_1	A0A367JN69	A0A367KSJ1	Usp domain-containing protein.	Iso-1-cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.790
CU098_009662	DDX20	A0A367JN69	A0A367JTZ8	Usp domain-containing protein.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.	0.770
CU098_009662	HBS1L	A0A367JN69	A0A367JC38	Usp domain-containing protein.	HBS1-like protein.	0.754
CU098_009662	LEO1_1	A0A367JN69	A0A367IX09	Usp domain-containing protein.	Paf1 complex component.	0.990