CU098_006881 protein (Rhizopus stolonifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU098_006881

Uncharacterized protein. (876 aa)

Predicted Functional Partners:

RPS7

0.996

CU098_013795

0.990

CU098_009431

0.989

RPS13

0.989

RPS15_1

0.988

RPS15_2

0.988

RPS3_1

0.987

RPL28_3

0.987

RPS3_2

0.987

RPL32

0.986

Your Current Organism:

Rhizopus stolonifer

NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU098_006881	CU098_009431	A0A367K6D4	A0A367J2U4	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.989
CU098_006881	CU098_013795	A0A367K6D4	A0A367KYC0	Uncharacterized protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.990
CU098_006881	RPL28_3	A0A367K6D4	A0A367JES7	Uncharacterized protein.	60S ribosomal protein L28.	0.987
CU098_006881	RPL32	A0A367K6D4	A0A367IX58	Uncharacterized protein.	60S ribosomal protein L32.	0.986
CU098_006881	RPS13	A0A367K6D4	A0A367KW64	Uncharacterized protein.	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	0.989
CU098_006881	RPS15_1	A0A367K6D4	A0A367JQ43	Uncharacterized protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.988
CU098_006881	RPS15_2	A0A367K6D4	A0A367KKE9	Uncharacterized protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.988
CU098_006881	RPS3_1	A0A367K6D4	A0A367IRA4	Uncharacterized protein.	40S ribosomal protein S3.	0.987
CU098_006881	RPS3_2	A0A367K6D4	A0A367JPN4	Uncharacterized protein.	40S ribosomal protein S3.	0.987
CU098_006881	RPS7	A0A367K6D4	A0A367KWH8	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.996
CU098_009431	CU098_006881	A0A367J2U4	A0A367K6D4	Ribosomal_L18e/L15P domain-containing protein.	Uncharacterized protein.	0.989
CU098_009431	CU098_013795	A0A367J2U4	A0A367KYC0	Ribosomal_L18e/L15P domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.998
CU098_009431	RPL28_3	A0A367J2U4	A0A367JES7	Ribosomal_L18e/L15P domain-containing protein.	60S ribosomal protein L28.	0.996
CU098_009431	RPL32	A0A367J2U4	A0A367IX58	Ribosomal_L18e/L15P domain-containing protein.	60S ribosomal protein L32.	0.998
CU098_009431	RPS13	A0A367J2U4	A0A367KW64	Ribosomal_L18e/L15P domain-containing protein.	Ribosomal 40S subunit protein S13; Belongs to the universal ribosomal protein uS15 family.	0.997
CU098_009431	RPS15_1	A0A367J2U4	A0A367JQ43	Ribosomal_L18e/L15P domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.995
CU098_009431	RPS15_2	A0A367J2U4	A0A367KKE9	Ribosomal_L18e/L15P domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.995
CU098_009431	RPS3_1	A0A367J2U4	A0A367IRA4	Ribosomal_L18e/L15P domain-containing protein.	40S ribosomal protein S3.	0.995
CU098_009431	RPS3_2	A0A367J2U4	A0A367JPN4	Ribosomal_L18e/L15P domain-containing protein.	40S ribosomal protein S3.	0.995
CU098_009431	RPS7	A0A367J2U4	A0A367KWH8	Ribosomal_L18e/L15P domain-containing protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.996