STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU098_009334Uncharacterized protein. (322 aa)    
Predicted Functional Partners:
MRPL24
39S ribosomal protein L24, mitochondrial.
  
  
 0.698
RPS29
40S ribosomal protein S29.
  
 
 0.615
CU098_010845
Elp3 domain-containing protein.
  
 
 0.615
MRPL39_1
54S ribosomal protein L39, mitochondrial.
  
  
 0.613
MRP2_1
40S ribosomal protein mrp2, mitochondrial.
  
 
 0.612
MRP2_2
40S ribosomal protein mrp2, mitochondrial.
  
 
 0.612
METAP1_2
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 
 0.563
METAP1_1
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 
 0.563
CU098_000920
Uncharacterized protein.
    
   0.556
CU098_004209
Uncharacterized protein.
    
   0.556
Your Current Organism:
Rhizopus stolonifer
NCBI taxonomy Id: 4846
Other names: Mucor stolonifer, R. stolonifer, Rhizopus nigricans
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