STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA98581.1LysM domain-containing protein. (183 aa)    
Predicted Functional Partners:
SKA80666.1
GMP synthase (glutamine-hydrolysing).
    
  0.757
SKB03831.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
   
 
  0.726
SKA98585.1
Uncharacterized sulfatase.
       0.689
SKA92944.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.661
SKA98588.1
Iduronate 2-sulfatase.
       0.649
SKA98591.1
Arylsulfatase.
       0.649
SKA84211.1
NACHT domain-containing protein.
  
 0.639
SKA92444.1
LysM domain-containing protein.
  
     0.456
SKB05982.1
Magnesium transporter.
  
  
  0.428
SKB05201.1
Conjugation TrbI-like protein.
    
 
 0.400
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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