STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_1517Phosphopantetheine-binding protein; InterPro IPR006162:IPR006163:IPR009081; KEGG: cja:CJA_0108 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: B3PFJ2 Acyl carrier protein; PFAM: Phosphopantetheine attachment site. (90 aa)    
Predicted Functional Partners:
Krac_1516
Cyclase; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sco:SCO5091 cyclase; SPTR: Q93IZ0 Cyclase; PFAM: Metallo-beta-lactamase superfamily.
       0.773
Krac_1515
Polyketide cyclase/dehydrase; InterPro IPR019587; KEGG: fre:Franean1_2391 cyclase/dehydrase; PFAM: Polyketide cyclase/dehydrase; SPTR: Q70DW8 RemI protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
       0.558
Krac_1518
Beta-ketoacyl synthase; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR016038:IPR016039; KEGG: adg:Adeg_0960 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase; SPTR: Q70DX1 RemB protein; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.515
Krac_1519
Beta-ketoacyl synthase; COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR014030:IPR014031:IPR016038:IPR016039; KEGG: plu:plu4191 hypothetical protein; PFAM: Beta-ketoacyl synthase; SPTR: Q70DX2 RemA protein; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.515
Krac_1520
Methyltransferase type 11; InterPro IPR013216:IPR016461; KEGG: cyn:Cyan7425_2963 O-methyltransferase family 2; PFAM: Methyltransferase type 11; SPTR: B8HL71 O-methyltransferase family 2; PFAM: O-methyltransferase.
       0.515
Krac_1514
Antibiotic biosynthesis monooxygenase; InterPro IPR010916:IPR007138:IPR011008; KEGG: msm:MSMEG_0205 tetracenomycin polyketide synthesis hydroxylase TcmH; PFAM: Antibiotic biosynthesis monooxygenase; SPTR: A0QNY2 Tetracenomycin polyketide synthesis hydroxylase TcmH; PFAM: Antibiotic biosynthesis monooxygenase.
       0.404
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.