STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Krac_2143Protein of unknown function DUF1486; COGs: COG5485 ester cyclase; InterPro IPR009959; KEGG: gvi:glr0227 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Q7NP31 Glr0227 protein; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related. (137 aa)    
Predicted Functional Partners:
Krac_2384
Protein of unknown function DUF1486; InterPro IPR009959; KEGG: npu:Npun_R2054 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: B5HZI5 Putative uncharacterized protein; PFAM: SnoaL-like polyketide cyclase; TIGRFAM: conserved hypothetical protein, steroid delta-isomerase-related.
  
     0.773
Krac_0831
Protein of unknown function DUF1486; InterPro IPR009959; KEGG: gvi:glr0227 hypothetical protein; PFAM: protein of unknown function DUF1486; SPTR: Q7NP31 Glr0227 protein; PFAM: SnoaL-like polyketide cyclase.
  
     0.768
Krac_2142
Peptidase U61 LD-carboxypeptidase A; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: sma:SAV_6279 hypothetical protein; PFAM: peptidase U61 LD-carboxypeptidase A; SPTR: C4DRF6 Uncharacterized MccF-like protein (Microcin C7 resistance); PFAM: LD-carboxypeptidase.
 
     0.542
Krac_2144
COGs: COG0515 Serine/threonine protein kinase; InterProIPR000719:IPR020635:IPR002290:IPR017441:IPR 008271:IPR017442:IPR011009; KEGG: nfa:nfa24250 putative serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, subgroup, catalytic domain; SPTR: Q5YX19 Putative serine/threonine protein kinase; PFAM: Protein kinase domain; Domain of Unknown Function (DUF1080).
       0.456
Krac_1854
TnsA endonuclease; InterPro IPR014833:IPR014832:IPR001584:IPR012337; KEGG: ava:Ava_C0193 integrase catalytic subunit; PFAM: TnsA endonuclease; Integrase catalytic region; SPTR: Q3MCE9 Integrase, catalytic region; PFAM: TnsA endonuclease N terminal; TnsA endonuclease C terminal; Integrase core domain.
  
     0.438
Krac_6376
TnsA endonuclease; InterPro IPR012337:IPR014833:IPR014832:IPR001584; KEGG: ava:Ava_C0193 integrase catalytic subunit; PFAM: TnsA endonuclease; Integrase catalytic region; SPTR: Q3MCE9 Integrase, catalytic region; PFAM: TnsA endonuclease N terminal; Mu transposase, C-terminal; Integrase core domain.
  
     0.403
Krac_9573
TnsA endonuclease; InterProIPR012337:IPR014833:IPR014832:IPR001584:IPR 015378; KEGG: ava:Ava_C0193 integrase catalytic subunit; PFAM: TnsA endonuclease; Integrase catalytic region; Transposase-like Mu; SPTR: Q3MCE9 Integrase, catalytic region; PFAM: Mu transposase, C-terminal; TnsA endonuclease N terminal; TnsA endonuclease C terminal; Integrase core domain.
  
     0.403
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.