STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Krac_4899Hypothetical protein. (54 aa)    
Predicted Functional Partners:
Krac_4900
KEGG: pol:Bpro_0146 hypothetical protein; SPTR: C4DP62 Putative uncharacterized protein.
       0.737
Krac_4898
NIPSNAP family containing protein; InterPro IPR012577; KEGG: mlo:mll8176 hypothetical protein; PFAM: NIPSNAP family containing protein; SPTR: A8TK42 Putative uncharacterized protein; PFAM: NIPSNAP.
       0.509
Krac_4901
Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196:IPR011991; KEGG: ttr:Tter_2021 helix-turn-helix type 11 domain protein; PFAM: Helix-turn-helix type 11 domain protein; SPTR: D1CGQ4 Helix-turn-helix type 11 domain protein; PFAM: HTH domain.
       0.474
Your Current Organism:
Ktedonobacter racemifer
NCBI taxonomy Id: 485913
Other names: K. racemifer DSM 44963, Ktedonobacter racemifer DSM 44963, Ktedonobacter racemifer str. DSM 44963, Ktedonobacter racemifer strain DSM 44963
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.