STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eKEGG: nph:NP0094A 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)    
Predicted Functional Partners:
rps6e
PFAM: Ribosomal protein S6e; KEGG: hma:rrnAC2212 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.999
rps24e
PFAM: Ribosomal protein S24e; KEGG: hma:rrnAC2488 30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.999
rpl31e
PFAM: Ribosomal protein L31e; KEGG: hma:rrnAC3113 50S ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
  
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.999
rps19p
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.999
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
  
 0.999
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.999
rps4e
PFAM: Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; KEGG: hma:rrnAC1600 30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family.
   
 0.999
Hmuk_1845
PFAM: Ribosomal protein L32e; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: hma:rrnAC1595 50S ribosomal protein L32e.
  
 0.999
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: hma:rrnAC1429 30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.999
Your Current Organism:
Halomicrobium mukohataei
NCBI taxonomy Id: 485914
Other names: H. mukohataei DSM 12286, Halomicrobium mukohataei DSM 12286, Halomicrobium mukohataei str. DSM 12286, Halomicrobium mukohataei strain DSM 12286
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.