STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hmuk_0843PFAM: glycoside hydrolase family 9; KEGG: vha:VIBHAR_03428 hypothetical protein. (559 aa)    
Predicted Functional Partners:
Hmuk_0844
KEGG: hma:rrnAC2151 hypothetical protein.
       0.550
Hmuk_0842
KEGG: hma:rrnAC2516 hypothetical protein.
       0.527
Hmuk_3148
PFAM: glycoside hydrolase family 18; PKD domain containing protein; Carbohydrate-binding family V/XII; SMART: chitinase II; PKD domain containing protein; Carbohydrate-binding family V/XII; KEGG: hsl:OE2201F chitinase.
  
     0.496
Hmuk_2923
PFAM: glycoside hydrolase family 18; PKD domain containing protein; Carbohydrate-binding family V/XII; SMART: chitinase II; PKD domain containing protein; Carbohydrate-binding family V/XII; KEGG: hsl:OE2205F chitinase.
  
     0.493
Hmuk_1372
PFAM: chitin-binding domain 3 protein; Carbohydrate- binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: hau:Haur_2647 chitin-binding domain- containing protein.
  
     0.477
Hmuk_2922
PFAM: glycoside hydrolase family 18; Carbohydrate- binding family V/XII; PKD domain containing protein; SMART: chitinase II; PKD domain containing protein; Carbohydrate-binding family V/XII; KEGG: hsl:OE2201F chitinase.
  
     0.462
Hmuk_1505
PFAM: Glycoside hydrolase, family 20, catalytic core; PKD domain containing protein; Carbohydrate-binding family V/XII; SMART: PKD domain containing protein; Carbohydrate- binding family V/XII; KEGG: sma:SAV_5268 beta-N-acetylhexosaminidase.
  
     0.405
Hmuk_1493
Lysozyme; KEGG: ecx:EcHS_A3533 bifunctional chitinase/lysozyme; PFAM: Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII.
  
     0.402
Your Current Organism:
Halomicrobium mukohataei
NCBI taxonomy Id: 485914
Other names: H. mukohataei DSM 12286, Halomicrobium mukohataei DSM 12286, Halomicrobium mukohataei str. DSM 12286, Halomicrobium mukohataei strain DSM 12286
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.