STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0055PFAM: sulphate transporter; KEGG: dat:HRM2_13280 SulP1. (399 aa)    
Predicted Functional Partners:
Dret_0167
KEGG: dvl:Dvul_0242 cytochrome c family protein; Contains selenocysteine.
    
   0.727
Dret_1415
3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.721
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.717
Dret_1148
PFAM: metallophosphoesterase; KEGG: dat:HRM2_43350 DNA repair exonuclease family protein.
   
   0.711
Dret_1255
PFAM: metallophosphoesterase; KEGG: hha:Hhal_1710 metallophosphoesterase.
   
   0.711
Dret_2394
PFAM: aspartate/glutamate/uridylate kinase; KEGG: dps:DP0145 hypothetical protein.
  
     0.617
Dret_1477
KEGG: sfu:Sfum_0275 conserved hypothetical cytosolic protein.
  
     0.594
Dret_2034
Adenylylsulfate kinase; KEGG: dps:DP2110 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; TIGRFAM: adenylylsulfate kinase; PFAM: ATP-sulfurylase; adenylylsulfate kinase.
   
  
 0.529
Dret_1305
KEGG: dal:Dalk_4628 hypothetical protein.
  
    0.460
Dret_1779
PFAM: peptidase M48 Ste24p; KEGG: dol:Dole_2972 peptidase M48 Ste24p.
  
    0.448
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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