STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_0248KEGG: dal:Dalk_2382 hypothetical protein. (114 aa)    
Predicted Functional Partners:
Dret_0249
KEGG: dde:Dde_3467 hypothetical protein.
 
     0.835
Dret_1466
KEGG: dma:DMR_16410 hypothetical protein.
  
     0.761
Dret_0241
KEGG: dma:DMR_39580 hypothetical protein.
  
     0.746
Dret_0242
KEGG: dde:Dde_3773 hypothetical protein.
  
     0.743
Dret_2496
KEGG: dal:Dalk_4409 putative lipoprotein.
  
     0.707
Dret_0137
KEGG: dde:Dde_0372 hypothetical protein.
  
     0.702
Dret_0246
PFAM: Dissimilatory sulfite reductase D; KEGG: dol:Dole_2671 dissimilatory sulfite reductase D.
  
     0.690
mopD
KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
     0.672
Dret_0302
KEGG: dvl:Dvul_2167 hypothetical protein.
  
     0.650
Dret_1882
KEGG: dde:Dde_0121 hypothetical protein.
  
     0.604
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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