STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dret_1016IstA2; KEGG: dat:HRM2_39510 IstA2. (499 aa)    
Predicted Functional Partners:
Dret_1015
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor.
  
 0.960
Dret_1176
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor.
  
 0.833
Dret_1500
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pca:Pcar_0791 putative DNA replication factor.
  
 0.833
Dret_0637
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA208 transposition helper protein.
  
 0.778
Your Current Organism:
Desulfohalobium retbaense
NCBI taxonomy Id: 485915
Other names: D. retbaense DSM 5692, Desulfohalobium retbaense DSM 5692, Desulfohalobium retbaense str. DSM 5692, Desulfohalobium retbaense strain DSM 5692
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.